Gene identifier | Annotation or description | Fold change1(tolC vs. wild-type) |
---|---|---|
Signal transduction | ||
SMb21560 | Putative two-component sensor histidine kinase | 14.7 |
SMb21561 | Putative two-component response regulator | 27.1 |
Translation | ||
SMc00320 | rbfA probable ribosome-binding factor A, rRNA processing protein | 8.9 |
SMc00323 | rpsO robable 30 S ribosomal protein S15 | 8.7 |
SMc00324 | pnp probable polyribonucleotide nucleotidyltransferase | 10.1 |
SMc00335 | rpsA 30 S ribosomal protein S1 | 10.2 |
SMc00485 | rpsD probable 30 S ribosomal subunit protein S4 | 9.2/8.8 |
SMc00522 | rhlE1 putative ATP-dependent RNA helicase | 8.5 |
SMc00565 | rplI probable 50 S ribosomal protein L9 | 13.4 |
SMc00567 | rpsR putative 30 S ribosomal protein S18 | 21.9 |
SMc00568 | rpsF putative 30 S ribosomal protein S6 | 25.9 |
SMc01287 | rpsM probable 30 S ribosomal protein S13 | 8.5 |
SMc01290 | rplO probable 50 S ribosomal protein L15 | 10.5 |
SMc01291 | rpmD probable 50 S ribosomal protein L30 | 12.9 |
SMc01292 | rpsE probable 30 S ribosomal protein S5 | 15.9 |
SMc01293 | rplR probable 50 S ribosomal protein L18 | 24.7/12.5 |
SMc01294 | rplF probable 50 S ribosomal protein L6 | 12.3 |
SMc01295 | rpsH probable 30 S ribosomal protein S8 | 12.9 |
SMc01296 | rpsN probable 30 S ribosomal protein S14 | 13.3 |
SMc01297 | rplE probable 50 S ribosomal protein L5 | 15.4 |
SMc01298 | rplX probable 50 S ribosomal protein L24 | 13.1 |
SMc01299 | rplN probable 50 S ribosomal protein L14 | 16.1/13.2 |
SMc01300 | rpsQ probable 30 S ribosomal protein S17 | 20.8/12.0 |
SMc01301 | rpmC probable 50 S ribosomal protein L29 | 13.1 |
SMc01302 | rplP probable 50 S ribosomal protein L16 | 12.4 |
SMc01303 | rpsC probable 30 S ribosomal protein S3 | 17.5/10.6 |
SMc01304 | rplV probable 50 S ribosomal protein L22 | 13.2 |
SMc01305 | rpsS probable 30 S ribosomal protein S19 | 15.2 |
SMc01306 | rplB probable 50 S ribosomal protein L2 | 20.5/18.1 |
SMc01307 | rplW probable 50 S ribosomal protein L23 | 31.9 |
SMc01308 | rplD probable 50 S ribosomal protein L4 | 24.1 |
SMc01309 | rplC probable 50 S ribosomal protein L3 | 22.4/16.5 |
SMc01310 | rpsJ probable 30 S ribosomal protein S10 | 25.6/19.7 |
SMc01312 | fusA1 probable elongation factor G | 29.6/21.0 |
SMc01313 | rpsG probable 30 S ribosomal protein S7 | 30.4 |
SMc01314 | rpsL probable 30 S ribosomal protein S12 | 19.5 |
SMc01326 | tuf probable elongation factor TU protein | 10.2/10.1 |
SMc02050 | tig probable trigger factor | 9.1 |
SMc02053 | trmFO methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase | 10.4 |
SMc02100 | tsf probable elongation factor TS (EF-TS) protein | 10.8 |
SMc02101 | rpsB probable 30 S ribosomal protein S2 | 13.7 |
SMc03242 | typA predicted membrane GTPase | 14.4 |
SMc03859 | rpsP probable 30 S ribosomal protein S16 | 8.2 |
Metabolism | ||
SMa0680 | Decarboxylase (lysine, ornithine, arginine) | 11.2 |
SMa0682 | Decarboxylase (lysine, ornithine, arginine) | 8.3 |
SMa0765 | fixN2 cytochrome c oxidase subunit I | 9.8 |
SMa0767 | fixQ2 nitrogen fixation protein | 11.5 |
SMa1179 | nosR regulatory protein | 13.8 |
SMa1182 | nosZ nitrous oxide reductase | 24.3 |
SMa1183 | nosD nitrous oxidase accessory protein | 12.4 |
SMa1188 | nosX accesory protein | 10.7 |
SMa1208 | fixS1 nitrogen fixation protein | 10.6 |
SMa1209 | fixI1 ATPase | 24.4 |
SMa1210 | fixH nitrogen fixation protein | 10.1 |
SMa1213 | fixP1 di-heme c-type cytochrome | 28.2 |
SMa1214 | fixQ1 nitrogen fixation protein | 37.2 |
SMa1216 | fixO1 cytochrome C oxidase subunit | 18.5 |
SMa1243 | azu1 pseudoazurin | 9.6 |
SMb21487 | cyoA putative cytochrome o ubiquinol oxidase chain II | 14.2 |
SMb21488 | cyoB putative cytochrome o ubiquinol oxidase chain I | 22.2 |
SMb21489 | cyoC putative cytochrome o ubiquinol oxidase chain III | 13.6 |
SMc00090 | cyoN putative sulfate adenylate transferase cysteine biosynthesis protein | 37.5 |
SMc00091 | cysD putative sulfate adenylate transferase subunit 2 cysteine biosynthesis protein | 21.1 |
SMc00092 | cysH phosphoadenosine phosphosulfate reductase | 13.4 |
SMc00595 | ndk probable nucleoside diphosphate kinase | 8.6 |
SMc00868 | atpF probable ATP synthase B chain transmembrane protein | 8.1/8.0 |
SMc00869 | atpF2 probable ATP synthase subunit B' transmembrane protein | 8.7 |
SMc00871 | atpB probable ATP synthase A chain transmembrane protein | 8.3 |
SMc01053 | cysG probable siroheme synthase | 13.9 |
SMc01169 | ald probable alanine dehydrogenase oxidoreductase | 26.2 |
SMc01923 | nuoJ probable NADH dehydrogenase I chain J transmembrane protein | 9.1 |
SMc01925 | nuoL probable NADH dehydrogenase I chain L transmembrane protein | 10.0 |
SMc02123 | Sulfate or sulfite assimilation protein | 12.6 |
SMc02124 | cysI putative sulfite reductase | 20.2 |
SMc02479 | mdh probable malate dehydrogenase | 9.9 |
SMc02480 | sucC probable succinyl-CoA synthetase beta chain | 9.4 |
SMc02481 | sucD probable succinyl-CoA synthetase alpha chain | 9.3 |
SMc02499 | atpA probable ATP synthase subunit alpha | 8.2 |
SMc02500 | atpG probable ATP synthase gamma chain | 16.2/11.1 |
SMc02502 | atpC probable ATP synthase epsilon chain | 9.8 |
SMc03858 | pheA putative chorismate mutase | 8.4 |
Transport | ||
SMa1185 | nosY permease | 8.5 |
SMb20346 | Putative efflux transmembrane protein | 8.3 |
SMc00873 | kup1 probable KUP system potassium uptake transmembrane protein | 11.4 |
SMc02509 | sitA manganese ABC transporter periplasmic substrate binding protein | 9.4 |
SMc03157 | metQ probable D-methionine -binding lipoprotein MetQ | 8.7/14.9 |
SMc03158 | metI probable D-methionine transport system permease protein MetI | 12.3 |
SMc03167 | MFS-type transport protein | 41.1 |
SMc03168 | Multidrug resistance efflux system | 41.5 |
Stress related | ||
SMa0744 | groEL2 chaperonin | 18.3/13.7 |
SMa0745 | groES2 chaperonin | 19.3 |
SMa1126 | Putative protease, transmembrane protein | 16.4 |
SMb21549 | thtR putative exported sulfurtransferase, Rhodanese protein | 29.3 |
SMb21562 | Hypothetical membrane-anchored protein | 69.6 |
SMc00913 | groEL1 60 KD chaperonin A | 17.5 |
SMc02365 | degP1 probable serine protease | 20.4/18.5 |
Motility | ||
SMc03014 | fliF flagellar M-ring transmembrane protein | 8.3 |
SMc03022 | motA chemotaxis (motility protein A) transmembrane | 16.2 |
SMc03024 | flgF lagellar basal-body rod protein | 15.6 |
SMc03027 | flgB flagellar basal-body rod protein | 9.3 |
SMc03028 | flgC flagellar basal-body rod protein | 12.9 |
SMc03030 | flgG flagellar basal-body rod protein | 11.0 |
SMc03047 | flgE flagellar hook protein | 8.1 |
SMc03054 | flhA probable flagellar biosynthesis transmembrane protein | 9.7 |