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Table 4 Strains of Citrus pathogenic Xanthomonas used to evaluate the CBC-LAMP assay

From: Rapid and sensitive detection of Citrus Bacterial Canker by loop-mediated isothermal amplification combined with simple visual evaluation methods

Species

Strain (s)

Origin

CBC type

Detection Method

  

Host

Place

Country

 

Gel

LFD

S G

Xanthomonas citri subsp. citri

XC1CE

Tangerine

Concordia, Entre Rios

Argentina

A

+

+

+

 

XC2COE

Orange

Colon, Entre Rios

Argentina

A

+

+

+

 

XC3AM-1, XC3AM-2

Lemon

Apostoles, Misiones

Argentina

A

+

+

+

 

XC4PM

Grapefruit

Posadas, Misiones

Argentina

A

+

+

+

 

XC5LF-1, XC5LF-2

Grapefruit

Las Lomitas

Argentina

A

+

+

+

 

XC7ETS-1, XC7ETS-2

Orange

El Tabacal, Salta

Argentina

A

+

+

+

 

XC8SPB-1, XC8SPB-2

Orange

San Pedro, Buenos Aires

Argentina

A

+

+

+

 

XC9CAT -1, XC9CAT-2

Orange

Catamarca

Argentina

A

+

+

+

 

XC10BVC -1, XC10BVC -2

Lemon

Bella Vista, Corrientes

Argentina

A

+

+

+

 

XC10BVC -3, XC10BVC -4, XC10BVC -5

Orange

Bella Vista, Corrientes

Argentina

A

+

+

+

 

XC10BVC -6, XC10BVC -7

Grapefruit

Bella Vista, Corrientes

Argentina

A

+

+

+

 

XC10BVC-8

Tangerine

Bella Vista, Corrientes

Argentina

A

+

+

+

 

XC6FT-1, XC6FT-2, XCT2, XCT3, XCT7, XCT9, XCT18, XCT22, XCT31, XCT33, XCT42

Lemon Leave

TucumĂ¡n

Argentina

A

+

+

+

 

XCT1, XCT17, XCT19, XCT21, XCT28, XCT29,

Lemon Fruit

TucumĂ¡n

Argentina

A

+

+

+

 

XCT44

Tangerine Leave

TucumĂ¡n

Argentina

A

+

+

+

 

306 (sequenced strain)

--

--

Brazil

A

+

+

+

 

625

--

Aratiba, Sao Paulo

Brazil

A

+

+

+

 

1637

--

EmbaĂºba, Sao Paulo

Brazil

A

+

+

+

 

1740

--

--

China

A

+

+

+

 

1801

--

--

Oman

A*

+

+

+

Xanthomonas fuscans subsp. Aurantifolii

B832

--

--

Argentina

B

+

+

+

 

382,1473

--

--

Brazil

C

+

+

+

Xanthomonas axonopodis pv. Citrumelo

1925

--

--

USA

--

-

-

-

  1. For each isolate CBC-LAMP reaction was performed in triplicate. When available, detailed data about the place of origin and type of sample is included. Gel: gel electrophoresis. LFD: lateral flow dipstick. SG: SYBRGreen.+: Positive reaction.-: Negative reaction.