From: Utilization of tmRNA sequences for bacterial identification
Strain name (name of other collection) | Nucleotides in variable positions | |
---|---|---|
Bacteria | [accession number of corresponding ssrA | (156, 208 and 235) of the ssrA |
gene nucleotide sequence] | gene of L. lactis | |
Lactococcus lactis ssp. | IL2961 (NCDO2091) [AF375554] | AGT |
lactis | IL2962 (NCDO2110) [AF375555] | AGC |
IL2965 (NCDO2118) [AF375552] | AGC | |
IL638 [AF375557] | AGC | |
CNRZ337 [AF375561] | AGC | |
Lactococcus lactis ssp. lactis | IL890 [AF375558] | AGC |
biovar.diacetylactis | IL986 [AF375562] | TGC |
IL1403* [AF375553] | TGC | |
CNRZ124 [AF375566] | TGC | |
CNRZ188 [AF375565] | TGC | |
Lactococcus lactis ssp. | IL582** [AF375556] | AAT |
cremoris | IL960** [AF375560] | AAT |
CNRZ112 [AF375563] | AAT | |
CNRZ119 (ATCC19257) [AF375564] | AAT | |
CNRZ355 [AF375559] | AAT | |
Lactococcus plantarum | CNRZ1322 (ATCC43199) [AF375567] | |
Lactococcus raffinolactis | CNRZ1214 [AF375578] | |
Lactococcus garvieae | CNRZ1323 [AF375579] | |
Streptococcus thermophilus | CNRZ1358 (ATCC19258) [AF375568] | |
Leuconostoc lactis | CIP102422 (ATCC19256) [AF375569] | |
Leuconostoc pseudomesenteroides | CIP103316 (ATCC12291) [AF375570] | |
Leuconostoc mesenteroides | CNRZ361 (ATCC19254) [AF375571] | |
ssp. cremoris | ||
Leuconostoc mesenteroides | CNRZ1022 [AF375572], | |
ssp. mesenteroides | CNRZ749 (ATCC8293) [AF375573] | |
Leuconostoc mesenteroides | CNRZ77 (ATCC19255) [AF375574] | |
ssp. dextranium | ||
Lactobacillus helveticus | CNRZ223 (ATCC15009) [AF375575] | |
Lactobacillus plantarum | CNRZ211 (ATCC14917) [AF375576] | |
Lactobacillus gallinarum | CNRZ1931 (ATCC33199, CIP103611) [AF375577] | |
Enterococcus faecalis | CNRZ1666 (ATCC19433) [AF375580] | |
Enterococcus faecium | LMG11423 [AF3755781] | |
Enterococcus durans | CNRZ129 (ATCC19432) [AF375582] | |
Listeria innocua | CLIP8811 (ATCC33090) [AF375583] | |
Listeria monocytogenes | ATCC15313 [AF375584] | |
Staphylococcus saprophyticus | ADN12 [AF375585] | |
Staphylococcus epidermidis | DSM20044 [AF375586] | |
Staphylococcus xylosus | DSM20266 [AF375587] | |
Bacillus subtilis | 168 [AF375588] | |
Escherichia coli K-12 | W3110; W3110 Δ ssrA |